#!/usr/bin/env python3 # -*- coding: utf-8 -*- """ Created on Tue Apr 28 15:13:51 2020 @author: joe """ import math import numpy as np jointpairs = [[1, 0], [1, 2], [2, 3], [3, 4], [1, 5], [5, 6], [6, 7], [1, 8], [8, 9], [9, 10], [10, 11], [8, 12], [12, 13], [13, 14], [0, 15], [0, 16] \ , [15, 17], [16, 18], [11, 24], [11, 22], [14, 21], [14, 19], [22, 23], [19, 20]] # [[1,0], [1,2], [2,3], [3,4], [1,5], [5,6], [6,7], [1,8], [8,9], [9,10],[10,11], [8,12],[12,13], [13,14], [0,15], [0,16]] # [[30, 31],[14, 15],[16, 17],[18, 19],[22, 23],[24, 25],[26, 27],[0, 1],[6, 7],[2, 3],[4, 5], [8, 9],[10, 11],[12, 13],[32, 33],[34, 35]] # [[15,17],[16,18],[11,24],[11,22],[14,21],[14,19],[22,23],[19,20]] # [[36,37],[38,39],[50,51],[46,47],[44,45],[40,41],[48,49],[42,43]] map25 = [[i, i + 1] for i in range(0, 52, 2)] def findoutmappair(all_peaks, paf): mid_num = 10 pairmap = [] for pair in jointpairs: candA = all_peaks[pair[0]] candB = all_peaks[pair[1]] if len(candA) == 0 or len(candB) == 0: pairmap.append([]) continue candA = candA[0] candB = candB[0] startend = list(zip(np.linspace(candA[0], candB[0], num=mid_num), \ np.linspace(candA[1], candB[1], num=mid_num))) vec = np.subtract(candB[:2], candA[:2]) norm = math.sqrt(vec[0] * vec[0] + vec[1] * vec[1]) vec = np.divide(vec, norm) score = 0. tmp = [] for mp in map25: score_mid = paf[:, :, [mp[0], mp[1]]] vec_x = np.array([score_mid[int(round(startend[I][1])), int(round(startend[I][0])), 0] \ for I in range(len(startend))]) vec_y = np.array([score_mid[int(round(startend[I][1])), int(round(startend[I][0])), 1] \ for I in range(len(startend))]) score_midpts = np.multiply(vec_x, vec[0]) + np.multiply(vec_y, vec[1]) score_midpts = score_midpts.sum() if score < score_midpts: score = score_midpts tmp = mp if score > 0.5: pairmap.append(tmp + [score, ]) else: pairmap.append([]) return pairmap